Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015851236.1_cds_XP_016511430.1_24172
CDS Infomation

[gene=LOC107828595] [db_xref=GeneID:107828595] [protein=DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like] [protein_id=XP_016511430.1] [location=complement(join(20593..20668,20937..21202,21332..21427,21569..21712,22751..23128,24485..24709,24852..24950,25224..25635,25718..25854,27163..27555))] [gbkey=CDS]
Sequence

ATGGCCTGTTCTTCTTCCATTATAGGAGTTCCCTCCATATACCAAACCAACCCTTCACGA
AGACCTATCCCTACCCCACTTTTATCCCTTCCTTACTCCAATGAAAAATCCCATTTTATT
AATGTTCGTCTCAGACATGCTTCTCTTGTGGCTTCTGCTGTGGTAACTCCAAATTCTTCA
GTTCTTAGTGAAGAAGCGTTCAAGGGAATTGGGGGTTTTGGGAAAGACTCTCTGAATGTT
AGCAGCGAACCTGAATACGATTCTGAGTCTGAGGTGGAGGATGATGATGAGTCAGGAACT
GAGGATGAACTTGCTATTTCTAAACTGGGTTTACCTCAGAGACTTGCTGACTCTCTTGAG
AAACGTGGAATTACTCATCTTTTCCCTATTCAGAGAGCTGTTCTAGTGCCGGCACTGGAA
GGCCAGGATATAATTGCTCGTGCAAAGACAGGAACAGGGAAGACACTTGCCTTTGGTATT
CCAGTATTGAAAAAGCTTAGTGGAGATGAAGAAATGAGAAATACTCTGAGGCGTGGGCGG
CTTCCCAAAATTCTGGTACTTGCACCTACTCGAGAGTTAGCCAAGCAAGTAGAGAAGGAA
ATGAAAGAGTCGGCACCATACTTGAACACTGTCTGCATATATGGAGGTGTTTCTTATGCT
ACACAGCAAAATGCACTGACCCGTGGGGTTGATGTTGTTGTTGGAACTCCAGGTAGACTT
ATTGACCTAATAAACAATAACACCTTGAAACTGGGGGAGGTGGAATATTTGGTCCTCGAC
GAGGCTGATCAAATGCTCGCAGTTGGATTTGAGGAAGATGTGGAAGTTATTTTGGAAAAA
CTTCCATCACAGAGGCAGAGCATGCTTTTCTCGGCCACCATGCCTGGCTGGGTAAAGAAA
CTGGCTAGGAAGTATTTGAACAATCCCTTGACAATTGACTTGGTTGGTGATCAAGAGGAA
AAGCTGGCAGAGGGGATCAAGCTTTATGCTCTATTAACTACAGCAACATCAAAACGAACC
ATACTCAGTGATCTTGTTACGGTTTATGCAAAGGGTGGAAAGACAATTGTTTTCACACAG
ACAAAGCGAGATGCTGATGAGGTCTCAATGGCATTATCAAACAGCATTTCTTCTGAGGCA
CTGCATGGCGACATTTCTCAACATCAGAGGGAAAGAACTCTAAATGGGTTTAGGCAAGGA
AAATTCACAGTGCTAGTTGCGACTGACGTTGCATCTCGTGGTCTTGATATACCGAATGTT
GACTTAGTAATCCATTATGAACTGCCCAATGATCCAGAGACTTTTGTTCATCGCTCTGGT
CGAACAGGACGTGCTGGAAAAGAAGGCAATGCTATTCTGATGTACACAGGTAATCAAAGG
CGAACTGTCAGATCTCTCGAACGTGATGTTGGGTGCAAATTTGAGTTCGTTAGTCCTCCA
TCTGTTAAAGAGGTTTTGGAGTCATCAGCTGAGCATGTGGTGGCTACACTTAATGGTGTT
CATCCCGAATCTGTTGAGTATTTCACTCCAACTGCGCAACAGTTGATGGAGCAACAAGGA
GTAAATGCCCTTGCTGCTGCACTTGCTCTTTTGGGTGGGTTTTCCAAACCGCCATCTTCT
CGATCTCTAATAACTCATGAGCAGGGGTGGACAACATTGCAGCTGACACGTGATTCTGTA
AATTCCAGAGGATTCCTGTCGGCAAGATCGGTTACTGGTTTCCTCGCTGATGTTTATCCA
CCCGCTGCTGATGAAGTTGGCAAAATTCACGTAATTGCAGATGAAAGGGTTCAGGGGGCT
GTGTTTGATCTTCCTGAGGAGATTGCAGCAGATCTACTAAATCAGGAGTTACCACCTGGA
AATACTATTTCCAAGATTACTAAGTTACCTGCTTTACAAGATGATGGGCCAGCTAGTGAT
TTCTATGGGAAGTTTTCAAGCAATAGTCGGGGGGCACGAGGAGGTTTAAGGGACCGTAGA
GGCAGAAATTCCCGGGGTTTGTCTAGTGGTCGATTCTCTGACAATGATGATGATAATTGG
GGTAATGACTTTAGGCCGCGAGGTGGCCGAACAAGAAGAGGAGGAAGTGATTGGCTCATT
GGTGGTGATAGGCGCACTAGCAGGCCTTCATCTGGAGGAAGCAGAGACAGATTTGGTGGT
GCATGTTTCAGTTGTGGACGCAGTGGTCACCGAGCATCTGAATGCCCTAACAAAAGGGAC
TATTAG

Peptide Sequence

PEP ID

XP_016511430.1
PEP Infomation

PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like [Nicotiana tabacum]
Sequence

MACSSSIIGVPSIYQTNPSRRPIPTPLLSLPYSNEKSHFINVRLRHASLVASAVVTPNSS
VLSEEAFKGIGGFGKDSLNVSSEPEYDSESEVEDDDESGTEDELAISKLGLPQRLADSLE
KRGITHLFPIQRAVLVPALEGQDIIARAKTGTGKTLAFGIPVLKKLSGDEEMRNTLRRGR
LPKILVLAPTRELAKQVEKEMKESAPYLNTVCIYGGVSYATQQNALTRGVDVVVGTPGRL
IDLINNNTLKLGEVEYLVLDEADQMLAVGFEEDVEVILEKLPSQRQSMLFSATMPGWVKK
LARKYLNNPLTIDLVGDQEEKLAEGIKLYALLTTATSKRTILSDLVTVYAKGGKTIVFTQ
TKRDADEVSMALSNSISSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNV
DLVIHYELPNDPETFVHRSGRTGRAGKEGNAILMYTGNQRRTVRSLERDVGCKFEFVSPP
SVKEVLESSAEHVVATLNGVHPESVEYFTPTAQQLMEQQGVNALAAALALLGGFSKPPSS
RSLITHEQGWTTLQLTRDSVNSRGFLSARSVTGFLADVYPPAADEVGKIHVIADERVQGA
VFDLPEEIAADLLNQELPPGNTISKITKLPALQDDGPASDFYGKFSSNSRGARGGLRDRR
GRNSRGLSSGRFSDNDDDNWGNDFRPRGGRTRRGGSDWLIGGDRRTSRPSSGGSRDRFGG
ACFSCGRSGHRASECPNKRDY

Transcript Sequence

Gene sequence data has not been registered.